3P49 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3P49_002 | 1/A/41:47 | GNRA | geometric HL_4V9F_036 HL_37824.7 | |
| HL_3P49_006 | 1/A/95:101 | No text annotation | ||
| HL_3P49_004 | 1/A/122:131 | No text annotation | ||
| HL_3P49_001 | 1/A/722:733 | No text annotation | geometric HL_5TBW_006 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3P49_005 | No text annotation | ||
| HL_3P49_003 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3P49_003 | 1/A/13:15, 1/A/30:31 | Single bulged A | geometric IL_4WF9_022 IL_31462.5 | |
| IL_3P49_006 | 1/A/34:38, 1/A/51:53 | No text annotation | geometric IL_3OXE_002 IL_61341.1 | |
| IL_3P49_013 | 1/A/34:39, 1/A/49:53 | No text annotation | ||
| IL_3P49_007 | 1/A/38:39, 1/A/49:51 | Major groove platform | geometric IL_7A0S_085 IL_48076.6 | |
| IL_3P49_009 | 1/A/109:113, 1/A/142:144 | No text annotation | homologous IL_3OWI_006 NA | |
| IL_3P49_010 | 1/A/113:114, 1/A/140:142 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
| IL_3P49_012 | 1/A/116:121, 1/A/132:138 | No text annotation | geometric IL_4V9F_057 IL_34822.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3P49_001 | Isolated non-canonical cWW pair | ||
| IL_3P49_002 | Isolated non-canonical cWW pair | ||
| IL_3P49_004 | Tandem non-canonical cWW pairs | ||
| IL_3P49_008 | Isolated non-canonical cWW pair | ||
| IL_3P49_011 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3P49_001 | 1/A/8:13, 1/A/31:32, 1/A/55:64 | No text annotation | ||
| J3_3P49_003 | 1/A/84:91, 1/A/105:107, 1/A/146:154 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3P49_002 | No text annotation |
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