IL_3PIO_036

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUCCCUAAAUG*CUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIO_036 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2907

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

3PIO|1|X|G|1014
3PIO|1|X|U|1015
3PIO|1|X|C|1016
3PIO|1|X|C|1017
3PIO|1|X|C|1018
3PIO|1|X|U|1019
3PIO|1|X|A|1020
3PIO|1|X|A|1021
3PIO|1|X|A|1022
3PIO|1|X|U|1023
3PIO|1|X|G|1024
*
3PIO|1|X|C|1160
3PIO|1|X|U|1161
3PIO|1|X|A|1162
3PIO|1|X|C|1163

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20