IL_3PIO_056

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAUC*GAUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIO_056 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3114

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

3PIO|1|X|C|1418
3PIO|1|X|G|1419
3PIO|1|X|A|1420
3PIO|1|X|U|1421
3PIO|1|X|C|1422
*
3PIO|1|X|G|1609
3PIO|1|X|A|1610
3PIO|1|X|U|1611
3PIO|1|X|U|1612
3PIO|1|X|G|1613

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain Q

50S ribosomal protein L23