IL_3PIO_060

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCA,UGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIO_060 not in the Motif Atlas

Geometric match to IL_4V8Q_188

Geometric discrepancy: 0.1896

The information below is about IL_4V8Q_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

3PIO|1|X|G|1443
3PIO|1|X|C|1444
3PIO|1|X|A|1445
*
3PIO|1|X|U|1578
3PIO|1|X|G|1579
3PIO|1|X|C|1580

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2