IL_3PIO_105

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

3PIO|1|X|A|2581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIO_105 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2375

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

3PIO|1|X|C|2570
3PIO|1|X|G|2571
*
3PIO|1|X|C|2580
3PIO|1|X|A|2581
3PIO|1|X|G|2582

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2