IL_3PIO_107
3D structure
- PDB id
- 3PIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3PIO_107 not in the Motif Atlas
- Geometric match to IL_7A0S_094
- Geometric discrepancy: 0.1178
- The information below is about IL_7A0S_094
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
3PIO|1|X|C|2631
3PIO|1|X|U|2632
3PIO|1|X|A|2633
3PIO|1|X|G|2634
3PIO|1|X|U|2635
3PIO|1|X|A|2636
3PIO|1|X|C|2637
*
3PIO|1|X|G|2642
3PIO|1|X|G|2643
3PIO|1|X|A|2644
3PIO|1|X|C|2645
3PIO|1|X|C|2646
3PIO|1|X|G|2647
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain E
- 50S ribosomal protein L6
- Chain H
- 50S ribosomal protein L14
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