IL_3PIO_126

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUUAGUAGC*GCGAACCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIO_126 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.256

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3PIO|1|X|G|215
3PIO|1|X|U|216
3PIO|1|X|U|217
3PIO|1|X|A|218
3PIO|1|X|G|219
3PIO|1|X|U|220
3PIO|1|X|A|221
3PIO|1|X|G|222
3PIO|1|X|C|223
*
3PIO|1|X|G|229
3PIO|1|X|C|230
3PIO|1|X|G|231
3PIO|1|X|A|232
3PIO|1|X|A|233
3PIO|1|X|C|234
3PIO|1|X|C|235
3PIO|1|X|C|236

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15