IL_3PIP_047

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

3PIP|1|X|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_047 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1973

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

3PIP|1|X|C|1221
3PIP|1|X|G|1222
3PIP|1|X|G|1223
3PIP|1|X|A|1224
3PIP|1|X|G|1225
3PIP|1|X|A|1226
3PIP|1|X|A|1227
3PIP|1|X|G|1228
*
3PIP|1|X|U|1247
3PIP|1|X|G|1248
3PIP|1|X|G|1249
3PIP|1|X|A|1250
3PIP|1|X|G|1251

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22