IL_3PIP_051

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGGAAG*CGCC

Length

10 nucleotides

Bulged bases

3PIP|1|X|G|1345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_051 not in the Motif Atlas

Geometric match to IL_5TBW_062

Geometric discrepancy: 0.3525

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

3PIP|1|X|G|1331
3PIP|1|X|G|1332
3PIP|1|X|G|1333
3PIP|1|X|A|1334
3PIP|1|X|A|1335
3PIP|1|X|G|1336
*
3PIP|1|X|C|1344
3PIP|1|X|G|1345
3PIP|1|X|C|1346
3PIP|1|X|C|1347

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain Q

50S ribosomal protein L23