IL_3PIP_057

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGAG*CGUUGAAA

Length

12 nucleotides

Bulged bases

3PIP|1|X|U|1601, 3PIP|1|X|G|1602

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_057 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.5487

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

3PIP|1|X|U|1426
3PIP|1|X|G|1428
3PIP|1|X|A|1429
3PIP|1|X|G|1430
*
3PIP|1|X|C|1598
3PIP|1|X|G|1599
3PIP|1|X|U|1600
3PIP|1|X|U|1601
3PIP|1|X|G|1602
3PIP|1|X|A|1603
3PIP|1|X|A|1604
3PIP|1|X|A|1605

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains