IL_3PIP_082

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUAG*CUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUAG,CUAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_082 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2601

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

3PIP|1|X|G|2029
3PIP|1|X|U|2030
3PIP|1|X|A|2031
3PIP|1|X|G|2032
*
3PIP|1|X|C|2598
3PIP|1|X|U|2599
3PIP|1|X|A|2600
3PIP|1|X|C|2601

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain Z

50S ribosomal protein L32