IL_3T1H_044

3D structure

PDB id

3T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

CCGG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3T1H_044 not in the Motif Atlas

Geometric match to IL_8C3A_438

Geometric discrepancy: 0.331

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

3T1H|1|A|C|985
3T1H|1|A|C|986
3T1H|1|A|G|987
3T1H|1|A|G|988
*
3T1H|1|A|C|997
3T1H|1|A|U|998
3T1H|1|A|G|999
3T1H|1|A|G|1000

Current chains

Chain A

16s rRNA

Nearby chains