IL_3T1Y_021
3D structure
- PDB id
- 3T1Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 3T1Y|1|A|A|515, 3T1Y|1|A|U|517, 3T1Y|1|A|A|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3T1Y_021 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2049
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
3T1Y|1|A|G|498
3T1Y|1|A|U|499
3T1Y|1|A|G|500
3T1Y|1|A|C|501
3T1Y|1|A|C|502
3T1Y|1|A|A|503
3T1Y|1|A|G|504
*
3T1Y|1|A|C|511
3T1Y|1|A|G|512
3T1Y|1|A|G|513
3T1Y|1|A|U|514
3T1Y|1|A|A|515
3T1Y|1|A|A|516
3T1Y|1|A|U|517
3T1Y|1|A|A|518
3T1Y|1|A|C|519
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
- Chain W
- mRNA A-site fragment
- Chain X
- tRNA ASL human Lys3
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