IL_3U5H_011

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGGGC*GUUCUUUGUA

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97842.1

Basepair signature

cWW-R-R-R-R-cWS-cWW-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

3U5H|1|5|U|169
3U5H|1|5|G|170
3U5H|1|5|G|171
3U5H|1|5|G|172
3U5H|1|5|G|173
3U5H|1|5|C|174
*
3U5H|1|5|G|244
3U5H|1|5|U|245
3U5H|1|5|U|246
3U5H|1|5|C|247
3U5H|1|5|U|248
3U5H|1|5|U|249
3U5H|1|5|U|250
3U5H|1|5|G|251
3U5H|1|5|U|252
3U5H|1|5|A|253

Current chains

Chain 5

25S rRNA

Nearby chains