IL_3U5H_021

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

3U5H|1|5|U|534, 3U5H|1|5|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05221.1

Basepair signature

cWW-cWW-bif-tHW-cWH-tSW-cSH-cWH-cSH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

3U5H|1|5|G|531
3U5H|1|5|A|532
3U5H|1|5|A|533
3U5H|1|5|U|534
3U5H|1|5|G|535
3U5H|1|5|U|536
3U5H|1|5|A|537
3U5H|1|5|G|538
*
3U5H|1|5|U|553
3U5H|1|5|A|554
3U5H|1|5|U|555
3U5H|1|5|U|556
3U5H|1|5|A|557
3U5H|1|5|U|558
3U5H|1|5|A|559
3U5H|1|5|G|560
3U5H|1|5|C|561

Current chains

Chain 5

25S rRNA

Nearby chains