IL_3U5H_040

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGGUAA*UAAAUAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73281.2

Basepair signature

cWW-tSH-tHW-L-cSH-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3U5H|1|5|G|991
3U5H|1|5|A|992
3U5H|1|5|G|993
3U5H|1|5|G|994
3U5H|1|5|U|995
3U5H|1|5|A|996
3U5H|1|5|A|997
*
3U5H|1|5|U|1052
3U5H|1|5|A|1053
3U5H|1|5|A|1054
3U5H|1|5|A|1055
3U5H|1|5|U|1056
3U5H|1|5|A|1057
3U5H|1|5|U|1058

Current chains

Chain 5

25S rRNA

Nearby chains

Chain 7

5S rRNA