IL_3U5H_090

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

3U5H|1|5|U|2159, 3U5H|1|5|U|2175, 3U5H|1|5|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15702.2

Basepair signature

cWW-R-tSS-tWW-tWW-cWW

Number of instances in this motif group

5

Unit IDs

3U5H|1|5|C|2156
3U5H|1|5|G|2157
3U5H|1|5|A|2158
3U5H|1|5|U|2159
3U5H|1|5|G|2160
3U5H|1|5|G|2161
*
3U5H|1|5|U|2173
3U5H|1|5|G|2174
3U5H|1|5|U|2175
3U5H|1|5|U|2176
3U5H|1|5|G|2177
3U5H|1|5|A|2178
3U5H|1|5|C|2179
3U5H|1|5|G|2180

Current chains

Chain 5

25S rRNA

Nearby chains