IL_3U5H_139

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51439.1

Basepair signature

cWW-tSH-L-L-tHH-cWW

Number of instances in this motif group

6

Unit IDs

3U5H|1|5|U|3332
3U5H|1|5|G|3333
3U5H|1|5|U|3334
3U5H|1|5|A|3335
3U5H|1|5|A|3336
3U5H|1|5|G|3337
*
3U5H|1|5|C|3367
3U5H|1|5|U|3368
3U5H|1|5|G|3369
3U5H|1|5|A|3370
3U5H|1|5|G|3371

Current chains

Chain 5

25S rRNA

Nearby chains