Motif IL_51439.1 Version IL_51439.1 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 5-8 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_109 | 2QBG | 0.2077 | 1 | B | LSU rRNA | U | 2847 | G | 2848 | U | 2849 | A | 2850 | A | 2851 | G | 2852 | * | U | 2865 | U | 2866 | A | 2868 | G | 2869 | cWW | tSH | tHH | cWW | |
| 2 | IL_1S72_097 | 1S72 | 0.1361 | 1 | tHS double platform (H) | 0 | LSU rRNA | U | 2864 | G | 2865 | U | 2866 | G | 2867 | C | 2868 | G | 2869 | * | U | 2888 | U | 2889 | A | 2891 | G | 2892 | cWW | tSH | tHH | cWW |
| 3 | IL_4CUV_145 | 4CUV | 0.0956 | 1 | 1 | LSU rRNA | U | 3332 | G | 3333 | U | 3334 | A | 3335 | A | 3336 | G | 3337 | * | C | 3367 | U | 3368 | A | 3370 | G | 3371 | cWW | tSH | ntHH | cWW | |
| 4 | IL_3U5H_139 | 3U5H | 0.0761 | 1 | 5 | LSU rRNA | U | 3332 | G | 3333 | U | 3334 | A | 3335 | A | 3336 | G | 3337 | * | C | 3367 | U | 3368 | A | 3370 | G | 3371 | cWW | ntSH | tHH | cWW | |
| 5 | IL_1VX6_137 | 1VX6 | 0.0000 | 1 | A | LSU rRNA | U | 3724 | G | 3725 | U | 3726 | A | 3727 | A | 3728 | A | 3729 | * | U | 3759 | U | 3760 | A | 3762 | G | 3763 | cWW | ntSH | ntHH | cWW | |
| 6 | IL_4A1B_130 | 4A1B | 0.0866 | 1 | 1 | LSU rRNA | U | 3290 | G | 3291 | U | 3292 | A | 3293 | A | 3294 | G | 3295 | * | C | 3323 | U | 3324 | A | 3326 | G | 3327 | cWW | ntSH | ntHH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAAG*CUGAG | 3 |
| UGUAAG*UUGAG | 1 |
| UGUGCG*UUAAG | 1 |
| UGUAAA*UUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*UGA | 5 |
| GUGC*UAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_51439.1 | Only in the parent motif |
|---|---|---|---|
| IL_79083.4 Compare | IL_4A1B_130, IL_3U5H_139, IL_2QBG_109 | IL_1VX6_137, IL_4CUV_145, IL_1S72_097 | IL_4NVV_106, IL_4IOA_103 |
| IL_67128.1 Compare | IL_4CUV_145, IL_1S72_097 | IL_4A1B_130, IL_1VX6_137, IL_3U5H_139, IL_2QBG_109 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- tHS double platform (H) (1)
- Basepair signature
- cWW-tSH-L-L-tHH-cWW
- Heat map statistics
- Min 0.08 | Avg 0.12 | Max 0.21
Coloring options: