IL_3V7E_008

3D structure

PDB id

3V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YbxF bound to the SAM-I riboswitch aptamer

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AGC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGC,GCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3V7E_008 not in the Motif Atlas

Geometric match to IL_3DIL_006

Geometric discrepancy: 0.1458

The information below is about IL_3DIL_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3V7E|1|D|A|263
3V7E|1|D|G|264
3V7E|1|D|C|265
*
3V7E|1|D|G|270
3V7E|1|D|C|271
3V7E|1|D|U|272

Current chains

Chain D

SAM-I riboswitch aptamer with an engineered helix P3

Nearby chains