IL_3W3S_006

3D structure

PDB id

3W3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of A. aeolicus tRNASec in complex with M. kandleri SerRS

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_42589.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

45

Unit IDs

3W3S|1|B|G|47|||A|43_455
3W3S|1|B|G|47|||B|43_455
3W3S|1|B|U|47|||C|43_455
*
3W3S|1|B|A|47|||N|43_455
3W3S|1|B|G|47|||O|43_455
3W3S|1|B|C|47|||P|43_455

Current chains

Chain B

selenocysteine tRNA

Nearby chains

Chain A

Type-2 serine--tRNA ligase