3W3S Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3W3S_001 | 1/B/15:20A | tRNA D-loop HL_38901.2 | ||
| HL_3W3S_002 | 1/B/31:39 | tRNA anticodon loop HL_06059.5 | ||
| HL_3W3S_003 | 1/B/47F:47K | GNRA HL_37824.7 | ||
| HL_3W3S_004 | 1/B/53:61 | T-loop with 2 stacked bulged bases HL_28252.7 | ||
| HL_3W3S_005 | 1/B/15:20A | tRNA D-loop | ||
| HL_3W3S_006 | 1/B/31:39 | tRNA anticodon loop | ||
| HL_3W3S_007 | 1/B/47F:47K | GNRA | ||
| HL_3W3S_008 | 1/B/53:61 | T-loop with 2 stacked bulged bases |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3W3S_002 | 1/B/26:27, 1/B/43:44 | Single bulged U IL_89505.4 | ||
| IL_3W3S_001 | 1/B/11:12, 1/B/23:24 | Single bulged C IL_61258.15 | ||
| IL_3W3S_003 | 1/B/47A:47C, 1/B/47N:47P | Isolated cWH basepair IL_10167.5 | ||
| IL_3W3S_004 | 1/B/11:12, 1/B/23:24 | Single bulged C | ||
| IL_3W3S_005 | 1/B/26:27, 1/B/43:44 | Single bulged U | ||
| IL_3W3S_006 | 1/B/47A:47C, 1/B/47N:47P | Isolated cWH basepair |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_3W3S_001 | 1/B/7:10, 1/B/25:26, 1/B/44:45, 1/B/47:49, 1/B/65:66 | No text annotation J5_59638.1 | ||
| J5_3W3S_002 | 1/B/7:10, 1/B/25:26, 1/B/44:45, 1/B/47:49, 1/B/65:66 | No text annotation |
Problematic loops
No problematic loops
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