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Motif IL_42589.5 Version IL_42589.5 of this group appears in releases 3.48 to 3.61

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-4
1 IL_1L9A_0071L9A0.80330Isolated cWH basepairB SRP RNAG210U211C212*G187G188C189cWWcWW
2 IL_6F4H_0016F4H0.78530Isolated cWH basepairDU1-SL2G20C21C22*G1G2C3cWWncWHcWW
3 IL_4WF9_0454WF90.75200Isolated cWH basepairX LSU rRNAG1243G1244G1245*C1277G1278C1279cWWcWHcWW
4 IL_4V88_4534V880.76220Isolated cWH basepairA6 SSU rRNAC1323G1324A1325*U1290G1291G1292cWWcWHcWW
5 IL_4V88_4274V880.77810Isolated cWH basepairA6 SSU rRNAC848C849A850*U822G823G824cWWncWHcWW
6 IL_3R1D_0023R1D0.78740Isolated cWH basepairB+ARNA (11-mer)C5G6G7*C5G6G7cWWcWHcWW
7 IL_4KQ0_0054KQ00.76200Isolated cWH basepairB+ERNA (19-mer)C15G16G17*C3G4G5cWWcWHcWW
8 IL_4KQ0_0014KQ00.76230Isolated cWH basepairE+BRNA (19-mer)C15G16G17*C3G4G5cWWcWHcWW
9 IL_3R1C_0323R1C0.76840Isolated cWH basepairE+FRNA (8-mer)C5G6G7*C2G3G4cWWcWHcWW
10 IL_3SJ2_0033SJ20.76540Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
11 IL_4JGN_0034JGN0.57590Isolated non-canonical cWW pairERNA (20-mer)C511U512G513*C511||||4_555U512||||4_555G513||||4_555cWWncWwcWW
12 IL_364D_004364D0.81930Self complementaryC+BRNA (31-mer)U95G96C97*G79U80G81cWWncWWcWW
13 IL_2D6F_0012D6F0.65530Self complementaryF tRNAC941G942G943*C927U928G929cWWncWWcWW
14 IL_3NJ7_0043NJ70.65220Isolated near basepairD+CRNA (10-mer)C3A4G5*C6A7G8cWWcWW
15 IL_3NJ7_0033NJ70.65850Isolated near basepairC+DRNA (10-mer)C3A4G5*C6A7G8cWWcWW
16 IL_2ZI0_0012ZI00.73190Isolated near basepairD+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
17 IL_2ZI0_0022ZI00.73190Isolated near basepairD+CRNA (21-mer)U9||||2_545U10||||2_545A11||||2_545*U9||||2_545U10||||2_545A11||||2_545cWWcWW
18 IL_7A0S_0307A0S0.62220Isolated near basepairX LSU rRNAA883C884A885*U917A918U919cWWcWW
19 IL_7A0S_0387A0S0.63551Isolated non-canonical cWW pairX LSU rRNAG1042A1043G1045*C1132G1133C1134cWWncWWcWW
20 IL_4WF9_0414WF90.62981Isolated non-canonical cWW pairX LSU rRNAG1075A1076G1078*C1165G1166C1167cWWncWWcWW
21 IL_2W2H_0022W2H0.38800Isolated cWH basepairRRNA (21-mer)G17U18C19*G8A9U10ncWWncWWcWW
22 IL_4V88_4054V880.33310Isolated cWH basepairA6 SSU rRNAG389G390A391*U406A407C408cWWcHWcWW
23 IL_3W3S_0063W3S0.26800Isolated cWH basepairBSelenocysteine transfer RNAG47|||A|43_455G47|||B|43_455U47|||C|43_455*A47|||N|43_455G47|||O|43_455C47|||P|43_455cWWcHWcWW
24 IL_3W3S_0033W3S0.26800Isolated cWH basepairBSelenocysteine transfer RNAG47|||AG47|||BU47|||C*A47|||NG47|||OC47|||PcWWcHWcWW
25 IL_5F5F_0015F5F0.34090Isolated cWH basepairBRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
26 IL_5F5F_0035F5F0.32860Isolated cWH basepairFRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
27 IL_5J7L_0115J7L0.22910Isolated cWH basepairAA SSU rRNAC176G177C178*G144G145G146cWWcHWcWW
28 IL_3D0M_0013D0M0.17790Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||16_545G11||||16_545A12||||16_545cWWcHWncWW
29 IL_3D0M_0023D0M0.17790Isolated cWH basepairXRNA (16-mer)U7||||16_545G8||||16_545A9||||16_545*U10G11A12cWWcHWncWW
30 IL_6RA4_0026RA40.15350Isolated cWH basepairL+MRNA (9-mer)U403G404A405*U403G404A405cWWcHWcWW
31 IL_4KQ0_0044KQ00.12940Isolated cWH basepairE+BRNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
32 IL_4KQ0_0024KQ00.12920Isolated cWH basepairB+ERNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
33 IL_6IA2_0036IA20.16480Isolated cWH basepairA+BRNA (19-mer)C9G10||AG11*C9G10||AG11||AcWWcHWcWW
34 IL_3CZW_0013CZW0.00000Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||2_555G11||||2_555A12||||2_555cWWcHWcWW
35 IL_3CZW_0023CZW0.00000Isolated cWH basepairXRNA (16-mer)U7||||2_555G8||||2_555A9||||2_555*U10G11A12cWWcHWcWW
36 IL_4KQ0_0034KQ00.14100Isolated cWH basepairB+ERNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
37 IL_3SJ2_0013SJ20.11300Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
38 IL_3R1C_0183R1C0.11810Isolated cWH basepairQ+RRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
39 IL_3R1C_0123R1C0.11360Isolated cWH basepairL+KRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
40 IL_3R1C_0113R1C0.11160Isolated cWH basepairK+LRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
41 IL_3SJ2_0023SJ20.11450Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C10G11G12*C10G11G12cWWcHWcWW
42 IL_3R1C_0173R1C0.12550Isolated cWH basepairR+QRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
43 IL_3R1C_0313R1C0.14390Isolated cWH basepairF+ERNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
44 IL_4E5C_0014E5C0.15950Isolated cWH basepairB+ARNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
45 IL_406D_002406D0.34670Isolated cWH basepairE+ARNA (17-mer)U25||AG26||AG27||A*U8||AG9||AG10||AcWWncHWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG17
UGA*UGA5
CAG*CAG2
UUA*UUA2
GAUG*CGC2
GGU*AGC2
UGC*GGA2
GUC*GGC1
GCC*GGC1
GGG*CGC1
CGA*UGG1
CCA*UGG1
CUG*CUG1
UGC*GUG1
CGG*CUG1
ACA*UAU1
GUC*GAU1
GGA*UAC1
CGC*GGG1
UGG*UGG1
Non-Watson-Crick part of the motif
SequenceCounts
G*G30
U*U3
C*G2
G*U2
A*A2
AU*G2
U*G1
C*A1
U*A1
G*A1

Release history

Release3.483.493.503.513.523.533.543.553.563.573.583.593.603.61
Date2021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-17
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (35)
  • Isolated near basepair (5)
  • Isolated non-canonical cWW pair (3)
  • Self complementary (2)
    • Basepair signature
    cWW-cHW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.55 | Max 1.00
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