IL_3WFQ_002

3D structure

PDB id

3WFQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA processing enzyme complex 1

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GCUC*GAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCUC,GAGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3WFQ_002 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.3493

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

3WFQ|1|D|G|10
3WFQ|1|D|C|11
3WFQ|1|D|U|12
3WFQ|1|D|C|13
*
3WFQ|1|D|G|22
3WFQ|1|D|A|23
3WFQ|1|D|G|24
3WFQ|1|D|C|25

Current chains

Chain D

RNA (73-MER)

Nearby chains

Chain F

Poly A polymerase