IL_4A1B_025

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GGAGUCAC*GAAAAC

Length

14 nucleotides

Bulged bases

4A1B|1|1|A|564, 4A1B|1|1|G|565

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44977.1

Basepair signature

cWW-cWW-L-R-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4A1B|1|1|G|562
4A1B|1|1|G|563
4A1B|1|1|A|564
4A1B|1|1|G|565
4A1B|1|1|U|566
4A1B|1|1|C|567
4A1B|1|1|A|568
4A1B|1|1|C|569
*
4A1B|1|1|G|600
4A1B|1|1|A|601
4A1B|1|1|A|602
4A1B|1|1|A|603
4A1B|1|1|A|604
4A1B|1|1|C|605

Current chains

Chain 1

26S RRNA

Nearby chains

Chain F

RPL14

Chain X

RPL18A