Motif IL_44977.1 Version IL_44977.1 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_038 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | G | 703 | C | 704 | U | 705 | A | 706 | A | 707 | C | 708 | * | G | 730 | C | 731 | G | 732 | A | 733 | A | 734 | C | 735 | cWW | ncWW | ntHS | cWW | cWW |
| 2 | IL_4A1B_025 | 4A1B | 0.7860 | 2 | 1 | 26S RRNA | G | 562 | G | 563 | U | 566 | C | 567 | A | 568 | C | 569 | * | G | 600 | A | 601 | A | 602 | A | 603 | A | 604 | C | 605 | cWW | cWW | ncBW | ncWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUAAC*GCGAAC | 1 |
| GGAGUCAC*GAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*CGAA | 1 |
| GAGUCA*AAAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_44977.1 | Only in the parent motif |
|---|---|---|---|
| IL_37171.1 Compare | IL_3U5F_038 | IL_4A1B_025 | IL_4NVV_033, IL_3B5F_001 |
| IL_79955.2 Compare | IL_4A1B_025 | IL_3U5F_038 | IL_1FJG_030, IL_2AW7_037 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-L-R-R-L-cWW-cWW
- Heat map statistics
- Min 0.79 | Avg 0.39 | Max 0.79
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