IL_4A1B_054

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAUAAG*CGAUAC

Length

12 nucleotides

Bulged bases

4A1B|1|1|U|1358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92122.2

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4A1B|1|1|G|1193
4A1B|1|1|A|1194
4A1B|1|1|U|1195
4A1B|1|1|A|1196
4A1B|1|1|A|1197
4A1B|1|1|G|1198
*
4A1B|1|1|C|1355
4A1B|1|1|G|1356
4A1B|1|1|A|1357
4A1B|1|1|U|1358
4A1B|1|1|A|1359
4A1B|1|1|C|1360

Current chains

Chain 1

26S RRNA

Nearby chains

Chain H

RPL35A