IL_4A1B_055

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGCCCAAA*UG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89033.2

Basepair signature

cWW-L-L-L-cSH-L-cWW

Number of instances in this motif group

8

Unit IDs

4A1B|1|1|C|1200
4A1B|1|1|G|1201
4A1B|1|1|C|1202
4A1B|1|1|C|1203
4A1B|1|1|C|1204
4A1B|1|1|A|1205
4A1B|1|1|A|1206
4A1B|1|1|A|1207
*
4A1B|1|1|U|1352
4A1B|1|1|G|1353

Current chains

Chain 1

26S RRNA

Nearby chains

Chain H

RPL35A

Chain X

RPL18A