Motif IL_89033.2 Version IL_89033.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 5-6 | 5-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_029 | 4BPP | 0.2822 | 0 | A | SSU rRNA | A | 543 | G | 544 | G | 545 | G | 546 | C | 547 | A | 548 | A | 549 | G | 550 | * | C | 581 | U | 582 | cWW | cSH | cWW | ||
| 2 | IL_3U5F_030 | 3U5F | 0.3036 | 0 | 6 | SSU rRNA | A | 550 | G | 551 | G | 552 | G | 553 | C | 554 | A | 555 | A | 556 | G | 557 | * | C | 587 | U | 588 | cWW | cSH | cWW | ||
| 3 | IL_3J7A_024 | 3J7A | 0.2851 | 0 | SSU/LSU pseudoknot (H) | A | SSU rRNA | A | 557 | G | 558 | G | 559 | G | 560 | C | 561 | A | 562 | A | 563 | G | 564 | * | C | 594 | U | 595 | cWW | cSH | cWW | |
| 4 | IL_1FJG_020 | 1FJG | 0.2593 | 0 | SSU/LSU pseudoknot (H) | A | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | C | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | ncSH | ntSW | cWW |
| 5 | IL_4A1B_055 | 4A1B | 0.1645 | 0 | 1 | LSU rRNA | C | 1200 | G | 1201 | C | 1202 | C | 1203 | C | 1204 | A | 1205 | A | 1206 | A | 1207 | * | U | 1352 | G | 1353 | cWW | cSH | cWW | ||
| 6 | IL_1S72_039 | 1S72 | 0.0000 | 0 | SSU/LSU pseudoknot (H) | 0 | LSU rRNA | U | 1101 | C | 1102 | C | 1103 | C | 1104 | C | 1105 | A | 1106 | A | 1107 | G | 1108 | * | C | 1254 | A | 1255 | cWW | cSH | cWW | |
| 7 | IL_4QCN_036 | 4QCN | 0.1277 | 0 | A | LSU rRNA | C | 1050 | C | 1051 | C | 1052 | C | 1053 | C | 1054 | A | 1055 | A | 1056 | G | 1057 | * | C | 1196 | G | 1197 | cWW | cSH | cWW | ||
| 8 | IL_2QBG_037 | 2QBG | 0.1965 | 0 | B | LSU rRNA | U | 1004 | C | 1005 | C | 1006 | C | 1007 | A | 1008 | A | 1009 | A | 1010 | G | 1011 | * | C | 1150 | A | 1151 | cWW | ncSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGGGCAAG*CU | 3 |
| CGGCCAAC*GG | 1 |
| CGCCCAAA*UG | 1 |
| UCCCCAAG*CA | 1 |
| CCCCCAAG*CG | 1 |
| UCCCAAAG*CA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGCAA* | 3 |
| CCCCAA* | 2 |
| GGCCAA* | 1 |
| GCCCAA* | 1 |
| CCCAAA* | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_89033.2 | Only in the parent motif |
|---|---|---|---|
| IL_89033.1 Compare | IL_2QBG_037, IL_4BPP_029, IL_3J7A_024, IL_3U5F_030, IL_1S72_039, IL_1FJG_020, IL_4QCN_036, IL_4A1B_055 | IL_4CUV_055, IL_2AW7_027, IL_4IOA_033, IL_3U5H_054 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- SSU/LSU pseudoknot (H) (3)
- Basepair signature
- cWW-L-L-L-cSH-L-cWW
- Heat map statistics
- Min 0.08 | Avg 0.21 | Max 0.35
Coloring options: