Motif IL_89033.2 Version IL_89033.2 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8	break		9		10	1-10	5-6	5-7	8-9
1	IL_4BPP_029	4BPP	0.2822		A	18S RRNA	A	543	G	544	G	545	G	546	C	547	A	548	A	549	G	550	*	C	581	U	582	cWW	cSH		cWW
2	IL_3U5F_030	3U5F	0.3036		6	18S rRNA	A	550	G	551	G	552	G	553	C	554	A	555	A	556	G	557	*	C	587	U	588	cWW	cSH		cWW
3	IL_3J7A_024	3J7A	0.2851	SSU/LSU pseudoknot (H)	A	SSU rRNA	A	557	G	558	G	559	G	560	C	561	A	562	A	563	G	564	*	C	594	U	595	cWW	cSH		cWW
4	IL_1FJG_020	1FJG	0.2593	SSU/LSU pseudoknot (H)	A	SSU rRNA	C	504	G	505	G	506	C	507	C	508	A	509	A	510	C	511	*	G	540	G	541	cWW	ncSH	ntSW	cWW
5	IL_4A1B_055	4A1B	0.1645		1	26S RRNA	C	1200	G	1201	C	1202	C	1203	C	1204	A	1205	A	1206	A	1207	*	U	1352	G	1353	cWW	cSH		cWW
6	IL_1S72_039	1S72	0.0000	SSU/LSU pseudoknot (H)	0	LSU rRNA	U	1101	C	1102	C	1103	C	1104	C	1105	A	1106	A	1107	G	1108	*	C	1254	A	1255	cWW	cSH		cWW
7	IL_4QCN_036	4QCN	0.1277		A	23S Ribosomal RNA	C	1050	C	1051	C	1052	C	1053	C	1054	A	1055	A	1056	G	1057	*	C	1196	G	1197	cWW	cSH		cWW
8	IL_2QBG_037	2QBG	0.1965		B	23S rRNA	U	1004	C	1005	C	1006	C	1007	A	1008	A	1009	A	1010	G	1011	*	C	1150	A	1151	cWW	ncSH		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AGGGCAAG*CU	3
CGGCCAAC*GG	1
CGCCCAAA*UG	1
UCCCCAAG*CA	1
CCCCCAAG*CG	1
UCCCAAAG*CA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGGCAA*	3
CCCCAA*	2
GGCCAA*	1
GCCCAA*	1
CCCAAA*	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_89033.2	Only in the parent motif
IL_89033.1 Compare	IL_2QBG_037, IL_4BPP_029, IL_3J7A_024, IL_3U5F_030, IL_1S72_039, IL_1FJG_020, IL_4QCN_036, IL_4A1B_055		IL_4CUV_055, IL_2AW7_027, IL_4IOA_033, IL_3U5H_054

Children motifs

This motif has no children motifs.

Annotations: (5)
SSU/LSU pseudoknot (H) (3)
Basepair signature: cWW-L-L-L-cSH-L-cWW
Heat map statistics: Min 0.08 | Avg 0.21 | Max 0.35

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