IL_4A1B_058
3D structure
- PDB id
- 4A1B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GAUACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 4A1B|1|1|U|1223, 4A1B|1|1|A|1329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16330.1
- Basepair signature
- cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4A1B|1|1|G|1221
4A1B|1|1|A|1222
4A1B|1|1|U|1223
4A1B|1|1|A|1224
4A1B|1|1|C|1225
4A1B|1|1|C|1226
4A1B|1|1|A|1227
4A1B|1|1|C|1228
4A1B|1|1|A|1229
4A1B|1|1|A|1230
4A1B|1|1|A|1231
4A1B|1|1|A|1232
*
4A1B|1|1|U|1326
4A1B|1|1|G|1327
4A1B|1|1|A|1328
4A1B|1|1|A|1329
4A1B|1|1|A|1330
4A1B|1|1|A|1331
4A1B|1|1|U|1332
4A1B|1|1|G|1333
4A1B|1|1|G|1334
4A1B|1|1|A|1335
4A1B|1|1|U|1336
4A1B|1|1|G|1337
4A1B|1|1|G|1338
4A1B|1|1|C|1339
4A1B|1|1|G|1340
4A1B|1|1|C|1341
Current chains
- Chain 1
- 26S RRNA
Nearby chains
- Chain H
- RPL35A
- Chain K
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
Coloring options: