Motif IL_16330.1 Version IL_16330.1 of this group appears in releases 0.6 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 1-25 | 2-24 | 9-14 | 10-13 | 11-12 | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_057 | 3U5H | 0.0000 | 3 | 5 | 25S rRNA | G | 1194 | A | 1195 | A | 1197 | C | 1198 | C | 1199 | A | 1200 | C | 1201 | A | 1202 | A | 1203 | A | 1204 | A | 1205 | * | U | 1299 | G | 1300 | A | 1301 | A | 1303 | A | 1304 | G | 1306 | G | 1307 | A | 1308 | U | 1309 | G | 1310 | G | 1311 | C | 1312 | G | 1313 | C | 1314 | cWW | cWW | tHH | tHS | cWW | |
| 2 | IL_4A1B_058 | 4A1B | 0.1653 | 3 | 1 | 26S RRNA | G | 1221 | A | 1222 | A | 1224 | C | 1225 | C | 1226 | A | 1227 | C | 1228 | A | 1229 | A | 1230 | A | 1231 | A | 1232 | * | U | 1326 | G | 1327 | A | 1328 | A | 1330 | A | 1331 | G | 1333 | G | 1334 | A | 1335 | U | 1336 | G | 1337 | G | 1338 | C | 1339 | G | 1340 | C | 1341 | cWW | cWW | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACACCACAAAA*UGAAAAUGGAUGGCGC | 1 |
| GAUACCACAAAA*UGAAAAUGGAUGGCGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACACCACAAA*GAAAAUGGAUGGCG | 1 |
| AUACCACAAA*GAAAAUGGAUGGCG | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
- Heat map statistics
- Min 0.17 | Avg 0.08 | Max 0.17
Coloring options: