IL_4A1B_075

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUAUG*UGUAUG

Length

11 nucleotides

Bulged bases

4A1B|1|1|U|1729, 4A1B|1|1|U|1767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87433.1

Basepair signature

cWW-L-R-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4A1B|1|1|C|1726
4A1B|1|1|U|1727
4A1B|1|1|A|1728
4A1B|1|1|U|1729
4A1B|1|1|G|1730
*
4A1B|1|1|U|1763
4A1B|1|1|G|1764
4A1B|1|1|U|1765
4A1B|1|1|A|1766
4A1B|1|1|U|1767
4A1B|1|1|G|1768

Current chains

Chain 1

26S RRNA

Nearby chains

Chain L

RPL34