Motif IL_87433.1 Version IL_87433.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_075 | 4A1B | 0.0000 | 2 | 1 | LSU rRNA | C | 1726 | U | 1727 | A | 1728 | G | 1730 | * | U | 1763 | G | 1764 | U | 1765 | A | 1766 | G | 1768 | cWW | cWW | ||
| 2 | IL_4A1B_029 | 4A1B | 0.9384 | 1 | 1 | LSU rRNA | C | 721 | G | 722 | C | 724 | C | 725 | * | G | 704 | A | 705 | U | 706 | A | 707 | G | 708 | cWW | tSH | tWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAUG*UGUAUG | 1 |
| CGUCC*GAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAU*GUAU | 1 |
| GUC*AUA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_87433.1 | Only in the parent motif |
|---|---|---|---|
| IL_17204.2 Compare | IL_4A1B_075 | IL_4A1B_029 | IL_4CUV_129, IL_3CUN_001 |
| IL_38488.1 Compare | IL_4A1B_029 | IL_4A1B_075 | IL_1Y0Q_002 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-L-cWW
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: