IL_4A1B_077

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UGAAAUU*AGAGAUA

Length

14 nucleotides

Bulged bases

4A1B|1|1|U|1740, 4A1B|1|1|A|1753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37053.4

Basepair signature

cWW-tSH-tSH-tHS-tSS-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4A1B|1|1|U|1735
4A1B|1|1|G|1736
4A1B|1|1|A|1737
4A1B|1|1|A|1738
4A1B|1|1|A|1739
4A1B|1|1|U|1740
4A1B|1|1|U|1741
*
4A1B|1|1|A|1751
4A1B|1|1|G|1752
4A1B|1|1|A|1753
4A1B|1|1|G|1754
4A1B|1|1|A|1755
4A1B|1|1|U|1756
4A1B|1|1|A|1757

Current chains

Chain 1

26S RRNA

Nearby chains

Chain G

RPL30

Chain L

RPL34

Chain N

RPL27