3D structure

PDB id
4A1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
AACAAUG*CUAU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_37197.4
Basepair signature
cWW-L-L-L-tHS-cWW-cWW
Number of instances in this motif group
4

Unit IDs

4A1B|1|1|A|1907
4A1B|1|1|A|1908
4A1B|1|1|C|1909
4A1B|1|1|A|1910
4A1B|1|1|A|1911
4A1B|1|1|U|1912
4A1B|1|1|G|1913
*
4A1B|1|1|C|2341
4A1B|1|1|U|2342
4A1B|1|1|A|2343
4A1B|1|1|U|2344

Current chains

Chain 1
26S RRNA

Nearby chains

No other chains within 10Å

Coloring options:

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