IL_4A1B_085

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UGACGG*UGAUGACA

Length

14 nucleotides

Bulged bases

4A1B|1|1|C|2155, 4A1B|1|1|A|2170, 4A1B|1|1|C|2174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15702.2

Basepair signature

cWW-R-tSS-tWW-tWW-cWW

Number of instances in this motif group

5

Unit IDs

4A1B|1|1|U|2152
4A1B|1|1|G|2153
4A1B|1|1|A|2154
4A1B|1|1|C|2155
4A1B|1|1|G|2156
4A1B|1|1|G|2157
*
4A1B|1|1|U|2168
4A1B|1|1|G|2169
4A1B|1|1|A|2170
4A1B|1|1|U|2171
4A1B|1|1|G|2172
4A1B|1|1|A|2173
4A1B|1|1|C|2174
4A1B|1|1|A|2175

Current chains

Chain 1

26S RRNA

Nearby chains