IL_4A1B_092

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

4A1B|1|1|A|2276, 4A1B|1|1|C|2282, 4A1B|1|1|C|2301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15123.3

Basepair signature

cWW-L-R-cHW-L-L-L-L-L-cWW

Number of instances in this motif group

6

Unit IDs

4A1B|1|1|C|2272
4A1B|1|1|C|2273
4A1B|1|1|A|2274
4A1B|1|1|A|2275
4A1B|1|1|A|2276
4A1B|1|1|U|2277
4A1B|1|1|G|2278
4A1B|1|1|C|2279
4A1B|1|1|C|2280
4A1B|1|1|U|2281
4A1B|1|1|C|2282
4A1B|1|1|G|2283
*
4A1B|1|1|C|2299
4A1B|1|1|G|2300
4A1B|1|1|C|2301
4A1B|1|1|G|2302

Current chains

Chain 1

26S RRNA

Nearby chains