IL_4A1B_099

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUGAAGA*UUGC

Length

11 nucleotides

Bulged bases

4A1B|1|1|G|2517, 4A1B|1|1|U|2574, 4A1B|1|1|G|2575

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_40892.2

Basepair signature

cWW-cWS-L-L-cWW

Number of instances in this motif group

3

Unit IDs

4A1B|1|1|G|2515
4A1B|1|1|U|2516
4A1B|1|1|G|2517
4A1B|1|1|A|2518
4A1B|1|1|A|2519
4A1B|1|1|G|2520
4A1B|1|1|A|2521
*
4A1B|1|1|U|2573
4A1B|1|1|U|2574
4A1B|1|1|G|2575
4A1B|1|1|C|2576

Current chains

Chain 1

26S RRNA

Nearby chains