Motif IL_40892.2 Version IL_40892.2 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 1-8 | 2-3 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_099 | 4A1B | 0.4733 | 3 | 1 | 26S RRNA | G | 2515 | U | 2516 | A | 2518 | A | 2519 | G | 2520 | A | 2521 | * | U | 2573 | C | 2576 | cWW | cWW | |
| 2 | IL_4CUV_107 | 4CUV | 0.0000 | 3 | 1 | 25S RRNA | A | 2520 | U | 2521 | A | 2523 | A | 2524 | G | 2525 | C | 2526 | * | G | 2584 | U | 2587 | cWW | ncWS | cWW |
| 3 | IL_3U5H_101 | 3U5H | 0.4167 | 3 | 5 | 25S rRNA | A | 2520 | U | 2521 | A | 2523 | A | 2524 | G | 2525 | C | 2526 | * | G | 2584 | U | 2587 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGAAGC*GGGU | 2 |
| GUGAAGA*UUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAG*GG | 2 |
| UGAAG*UG | 1 |
Release history
| Release | 1.15 | 1.17 | 1.18 |
|---|---|---|---|
| Date | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | Updated, 1 parent | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_40892.2 | Only in the parent motif |
|---|---|---|---|
| IL_40892.1 Compare | IL_4A1B_099, IL_3U5H_101 | IL_4CUV_107 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWS-L-L-cWW
- Heat map statistics
- Min 0.42 | Avg 0.32 | Max 0.53
Coloring options: