IL_4A1B_110

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37976.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

44

Unit IDs

4A1B|1|1|C|2823
4A1B|1|1|C|2824
4A1B|1|1|A|2825
4A1B|1|1|A|2826
4A1B|1|1|G|2827
*
4A1B|1|1|C|2837
4A1B|1|1|G|2838
4A1B|1|1|A|2839
4A1B|1|1|C|2840
4A1B|1|1|G|2841

Current chains

Chain 1

26S RRNA

Nearby chains

Chain K

UBIQUITIN-60S RIBOSOMAL PROTEIN L40