Motif IL_37976.1 Version IL_37976.1 of this group appears in releases 1.18 to 1.18
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3J7A_047 | 3J7A | 0.8426 | 0 | tSH-tHW-tHS (H) | A | SSU rRNA | U | 1059 | G | 1060 | A | 1061 | A | 1062 | G | 1063 | * | C | 1079 | G | 1080 | U | 1081 | A | 1082 | A | 1083 | cWW | tSH | tHS | cWW | ||
2 | IL_2QWY_001 | 2QWY | 0.5319 | 0 | A | SAM-II riboswitch | A | 46 | A | 47 | A | 48 | A | 49 | G | 50 | * | C | 16 | G | 17 | U | 18 | A | 19 | U | 20 | cWW | tSH | tHS | cWW | |||
3 | IL_4CUX_077 | 4CUX | 0.6296 | 0 | 2 | 18S RRNA | C | 1495 | U | 1496 | U | 1497 | G | 1498 | G | 1499 | * | U | 1508 | C | 1509 | U | 1510 | U | 1511 | G | 1512 | cWW | cwW | ncWW | cWW | |||
4 | IL_2AW7_058 | 2AW7 | 0.3091 | 0 | A | 16S ribosomal RNA | C | 1259 | G | 1260 | A | 1261 | C | 1262 | C | 1263 | * | G | 1272 | C | 1273 | A | 1274 | A | 1275 | G | 1276 | cWW | tSH | tHS | ncBW | cWW | ||
5 | IL_1S72_083 | 1S72 | 0.2129 | 0 | Triple sheared (H) | 0 | LSU rRNA | C | 2515 | G | 2516 | A | 2517 | C | 2518 | C | 2519 | * | G | 2501 | C | 2502 | A | 2503 | A | 2504 | G | 2505 | cWW | tSH | ntHS | cBW | cWW | |
6 | IL_4W23_080 | 4W23 | 0.3450 | 0 | 2 | 18S ribosomal RNA | U | 1733 | G | 1734 | A | 1735 | G | 1736 | G | 1737 | * | U | 1797 | C | 1798 | G | 1799 | A | 1800 | A | 1801 | cWW | tSH | tHS | ncWW | cWW | ||
7 | IL_1U6B_002 | 1U6B | 0.2916 | 0 | Triple sheared | B | 197-MER | G | 56 | A | 57 | A | 58 | A | 59 | C | 60 | * | G | 84 | C | 85 | A | 86 | A | 87 | C | 88 | cWW | tSH | tHS | ncWW | cWW | |
8 | IL_2QBG_094 | 2QBG | 0.3183 | 0 | B | 23S rRNA | C | 2480 | G | 2481 | A | 2482 | C | 2483 | G | 2484 | * | C | 2466 | C | 2467 | A | 2468 | A | 2469 | G | 2470 | cWW | tSH | ntHS | ncBW | cWW | ||
9 | IL_4A1B_110 | 4A1B | 0.3282 | 0 | 1 | 26S RRNA | C | 2837 | G | 2838 | A | 2839 | C | 2840 | G | 2841 | * | C | 2823 | C | 2824 | A | 2825 | A | 2826 | G | 2827 | cWW | tSH | tHS | ncBW | cWW | ||
10 | IL_4IOA_089 | 4IOA | 0.3618 | 0 | Triple sheared | X | LSU rRNA | C | 2459 | G | 2460 | G | 2461 | C | 2462 | G | 2463 | * | C | 2445 | C | 2446 | G | 2447 | A | 2448 | G | 2449 | cWW | tSH | ntHS | ncBW | cWW | |
11 | IL_4QCN_092 | 4QCN | 0.3635 | 0 | A | 23S Ribosomal RNA | C | 2492 | G | 2493 | G | 2494 | C | 2495 | G | 2496 | * | C | 2478 | C | 2479 | G | 2480 | A | 2481 | G | 2482 | cWW | tSH | cBW | cWW | |||
12 | IL_4W23_013 | 4W23 | 0.5590 | 0 | 2 | 18S ribosomal RNA | G | 207 | G | 208 | A | 209 | U | 210 | G | 211 | * | C | 188 | U | 189 | G | 190 | A | 191 | C | 192 | cWW | tSH | ntHS | ncwW | cWW | ||
13 | IL_1VX6_113 | 1VX6 | 0.4252 | 0 | A | 28S ribosomal RNA | C | 3208 | G | 3209 | A | 3210 | C | 3211 | G | 3212 | * | C | 3194 | C | 3195 | A | 3196 | A | 3197 | G | 3198 | cWW | tSH | ntHS | cWW | |||
14 | IL_3U5H_112 | 3U5H | 0.4137 | 0 | 5 | 25S rRNA | C | 2849 | G | 2850 | A | 2851 | C | 2852 | A | 2853 | * | U | 2835 | C | 2836 | A | 2837 | A | 2838 | G | 2839 | cWW | tSH | ntHS | cWW | |||
15 | IL_4CUV_116 | 4CUV | 0.4570 | 0 | 1 | 25S RRNA | C | 2849 | G | 2850 | A | 2851 | C | 2852 | A | 2853 | * | U | 2835 | C | 2836 | A | 2837 | A | 2838 | G | 2839 | cWW | tSH | ntHS | cWW | |||
16 | IL_4W21_140 | 4W21 | 0.4631 | 0 | 5 | 28S ribosomal RNA | C | 4426 | G | 4427 | A | 4428 | C | 4429 | G | 4430 | * | C | 4412 | C | 4413 | A | 4414 | A | 4415 | G | 4416 | ncWW | tSH | tHS | cWW | |||
17 | IL_3U5H_032 | 3U5H | 0.4111 | 0 | 5 | 25S rRNA | U | 834 | G | 835 | A | 836 | A | 837 | G | 838 | * | U | 855 | G | 856 | G | 857 | A | 858 | G | 859 | cWW | tSH | tHS | tHS | cWW | ||
18 | IL_4CUV_035 | 4CUV | 0.4363 | 0 | 1 | 25S RRNA | U | 834 | G | 835 | A | 836 | A | 837 | G | 838 | * | U | 855 | G | 856 | G | 857 | A | 858 | G | 859 | cWW | ntSH | ntHS | tHS | cWW | ||
19 | IL_2QBG_024 | 2QBG | 0.3882 | 0 | B | 23S rRNA | U | 703 | G | 704 | A | 705 | A | 706 | G | 707 | * | U | 724 | G | 725 | G | 726 | A | 727 | G | 728 | cWW | tSH | tHS | tHS | cWW | ||
20 | IL_4QCN_021 | 4QCN | 0.3810 | 0 | A | 23S Ribosomal RNA | U | 750 | G | 751 | A | 752 | A | 753 | G | 754 | * | U | 771 | G | 772 | G | 773 | A | 774 | G | 775 | cWW | tSH | ntHS | tHS | cWW | ||
21 | IL_1VX6_038 | 1VX6 | 0.4080 | 0 | A | 28S ribosomal RNA | U | 953 | G | 954 | A | 955 | A | 956 | G | 957 | * | U | 974 | G | 975 | G | 976 | A | 977 | G | 978 | cWW | ntSH | tHS | tHS | cWW | ||
22 | IL_1S72_028 | 1S72 | 0.3830 | 0 | 0 | LSU rRNA | U | 794 | G | 795 | A | 796 | A | 797 | G | 798 | * | U | 815 | G | 816 | G | 817 | A | 818 | A | 819 | cWW | tSH | tHS | tHS | cWW | ||
23 | IL_2QBG_068 | 2QBG | 0.3062 | 0 | B | 23S rRNA | U | 1720 | G | 1721 | A | 1722 | G | 1723 | G | 1724 | * | U | 1736 | G | 1737 | G | 1738 | A | 1739 | G | 1740 | cWW | tSH | tHS | ntHS | cWW | ||
24 | IL_3UCZ_001 | 3UCZ | 0.4332 | 0 | R | RNA (92-MER) | C | 22 | A | 23 | A | 24 | A | 25 | C | 26 | * | G | 41 | G | 42 | A | 43 | C | 44 | G | 45 | cWW | ntSH | tHS | cWW | |||
25 | IL_3IWN_002 | 3IWN | 0.3728 | 0 | Triple sheared | A | C-di-GMP riboswitch | C | 12 | A | 13 | A | 14 | A | 15 | C | 16 | * | G | 31 | G | 32 | A | 33 | C | 34 | G | 35 | cWW | ntSH | tHS | cWW | ||
26 | IL_1VX6_072 | 1VX6 | 0.3011 | 0 | A | 28S ribosomal RNA | U | 1800 | G | 1801 | A | 1802 | A | 1803 | C | 1804 | * | G | 2028 | G | 2029 | G | 2030 | A | 2031 | A | 2032 | cWW | tSH | tHS | tHS | cWW | ||
27 | IL_4CUV_073 | 4CUV | 0.3086 | 0 | 1 | 25S RRNA | U | 1645 | G | 1646 | A | 1647 | A | 1648 | U | 1649 | * | A | 1806 | G | 1807 | G | 1808 | A | 1809 | A | 1810 | cWW | tSH | tHS | tHS | cWW | ||
28 | IL_3U5H_075 | 3U5H | 0.2872 | 0 | 5 | 25S rRNA | U | 1645 | G | 1646 | A | 1647 | A | 1648 | U | 1649 | * | A | 1806 | G | 1807 | G | 1808 | A | 1809 | A | 1810 | cWW | tSH | tHS | tHS | cWW | ||
29 | IL_4A1B_125 | 4A1B | 0.3772 | 0 | 1 | 26S RRNA | U | 3217 | U | 3218 | A | 3219 | A | 3220 | C | 3221 | * | G | 3189 | A | 3190 | G | 3191 | C | 3192 | G | 3193 | cWW | ntSHa | ntHS | tHS | cWW | ||
30 | IL_4FAW_002 | 4FAW | 0.3350 | 0 | A | Group II catalytic intron D1-D4-3 | C | 70 | U | 71 | A | 72 | A | 73 | C | 74 | * | G | 113 | G | 114 | A | 115 | C | 116 | G | 117 | cWW | tSH | tHS | cWW | |||
31 | IL_1VW3_083 | 1VW3 | 0.0000 | 0 | A | 21S ribosomal RNA | C | 2902 | A | 2903 | A | 2904 | A | 2905 | U | 2906 | * | A | 3112 | U | 3113 | A | 3114 | A | 3115 | G | 3116 | cWW | tSH | tHS | ntHS | cWW | ||
32 | IL_4W21_097 | 4W21 | 0.2026 | 0 | 5 | 28S ribosomal RNA | C | 2589 | G | 2590 | A | 2591 | U | 2592 | C | 2593 | * | G | 2752 | G | 2753 | G | 2754 | A | 2755 | G | 2756 | cWW | tSH | ntHS | ntHS | cWW | ||
33 | IL_4QCN_071 | 4QCN | 0.2198 | 0 | A | 23S Ribosomal RNA | C | 1904 | G | 1905 | A | 1906 | A | 1907 | C | 1908 | * | G | 1887 | G | 1888 | G | 1889 | A | 1890 | G | 1891 | cWW | tSH | ntHS | tHS | cWW | ||
34 | IL_4IOA_070 | 4IOA | 0.2362 | 0 | Triple sheared | X | LSU rRNA | C | 1865 | G | 1866 | A | 1867 | A | 1868 | A | 1869 | * | U | 1848 | G | 1849 | G | 1850 | A | 1851 | G | 1852 | cWW | ntSH | tHS | tHS | cWW | |
35 | IL_2A64_006 | 2A64 | 0.2677 | 0 | Triple sheared | A | ribonuclease P RNA | C | 378 | G | 379 | A | 380 | A | 381 | G | 382 | * | C | 347 | G | 348 | G | 349 | A | 350 | G | 351 | cWW | tHS | tHS | cWW | ||
36 | IL_4BPP_090 | 4BPP | 0.2922 | 0 | A | 18S RRNA | G | 1672 | A | 1673 | A | 1674 | A | 1675 | A | 1676 | * | U | 1649 | G | 1650 | G | 1651 | A | 1652 | C | 1653 | cWW | tSH | tHS | tHS | cWW | ||
37 | IL_2A64_005 | 2A64 | 0.3243 | 0 | Triple sheared | A | ribonuclease P RNA | C | 284 | G | 285 | A | 286 | A | 287 | G | 288 | * | C | 297 | G | 298 | G | 299 | A | 300 | G | 301 | cWW | tSH | ntHS | tHS | cWW | |
38 | IL_3DHS_004 | 3DHS | 0.3552 | 0 | Triple sheared | A | RNase P RNA | C | 284 | G | 285 | A | 286 | A | 287 | G | 288 | * | C | 297 | G | 298 | G | 299 | A | 300 | G | 301 | cWW | ncSH | tHS | cWW | ||
39 | IL_3J7A_080 | 3J7A | 0.4094 | 0 | Triple sheared (H) | A | SSU rRNA | G | 2011 | G | 2012 | A | 2013 | A | 2014 | A | 2015 | * | U | 1975 | G | 1976 | G | 1977 | A | 1978 | C | 1979 | cWW | tHS | tHS | cWW | ||
40 | IL_3U5F_091 | 3U5F | 0.3970 | 0 | 6 | 18S rRNA | A | 1719 | G | 1720 | A | 1721 | A | 1722 | U | 1723 | * | A | 1678 | G | 1679 | G | 1680 | A | 1681 | U | 1682 | cWW | tHS | tHS | cWW | |||
41 | IL_1S72_021 | 1S72 | 0.5350 | 0 | AAA cross-strand stack (H) | 0 | LSU rRNA | C | 663 | U | 664 | A | 665 | A | 666 | C | 667 | * | G | 679 | G | 680 | G | 681 | A | 682 | G | 683 | cWW | ntWH | tHS | cWW | ||
42 | IL_2QBG_019 | 2QBG | 0.5387 | 0 | B | 23S rRNA | U | 606 | U | 607 | A | 608 | A | 609 | C | 610 | * | G | 618 | G | 619 | G | 620 | A | 621 | G | 622 | cWW | ntWH | tHS | cWW | |||
43 | IL_4QCN_015 | 4QCN | 0.5523 | 0 | A | 23S Ribosomal RNA | U | 629 | U | 630 | A | 631 | A | 632 | G | 633 | * | C | 643 | G | 644 | G | 645 | A | 646 | G | 647 | cWW | ntWH | tHS | cWW | |||
44 | IL_4IOA_012 | 4IOA | 0.6649 | 0 | AAA cross-strand stack | X | LSU rRNA | U | 616 | U | 617 | A | 618 | A | 619 | G | 620 | * | C | 629 | G | 630 | G | 631 | A | 632 | G | 633 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGAAG*UGGAG | 5 |
CGACG*CCAAG | 4 |
CGAAG*CGGAG | 3 |
CGACC*GCAAG | 2 |
CGGCG*CCGAG | 2 |
CGACA*UCAAG | 2 |
CAAAC*GGACG | 2 |
UGAAU*AGGAA | 2 |
UUAAG*CGGAG | 2 |
UGAAG*CGUAA | 1 |
AAAAG*CGUAU | 1 |
CUUGG*UCUUG | 1 |
UGAGG*UCGAA | 1 |
GAAAC*GCAAC | 1 |
GGAUG*CUGAC | 1 |
UGAAG*UGGAA | 1 |
UGAGG*UGGAG | 1 |
UGAAC*GGGAA | 1 |
UUAAC*GAGCG | 1 |
CUAAC*GGACG | 1 |
CAAAU*AUAAG | 1 |
CGAUC*GGGAG | 1 |
CGAAC*GGGAG | 1 |
CGAAA*UGGAG | 1 |
GAAAA*UGGAC | 1 |
GGAAA*UGGAC | 1 |
AGAAU*AGGAU | 1 |
CUAAC*GGGAG | 1 |
UUAAC*GGGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAA*GGA | 16 |
GAC*CAA | 8 |
UAA*GGA | 4 |
GGC*CGA | 2 |
AAA*GAC | 2 |
GAA*GUA | 1 |
AAA*GUA | 1 |
UUG*CUU | 1 |
GAG*CGA | 1 |
AAA*CAA | 1 |
GAU*UGA | 1 |
GAG*GGA | 1 |
UAA*AGC | 1 |
UAA*GAC | 1 |
AAA*UAA | 1 |
GAU*GGA | 1 |
AAA*GGA | 1 |
Release history
Release | 1.18 |
---|---|
Date | 2014-10-07 |
Status | > 2 parents |
Parent motifs
Children motifs
This motif has no children motifs.- Annotations
-
- (32)
- Triple sheared (7)
- Triple sheared (H) (2)
- AAA cross-strand stack (H) (1)
- tSH-tHW-tHS (H) (1)
- AAA cross-strand stack (1)
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.48 | Max 0.99
Coloring options: