IL_4A1B_118

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUUAGUAC*GGAACAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85647.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

25

Unit IDs

4A1B|1|1|G|3007
4A1B|1|1|U|3008
4A1B|1|1|U|3009
4A1B|1|1|A|3010
4A1B|1|1|G|3011
4A1B|1|1|U|3012
4A1B|1|1|A|3013
4A1B|1|1|C|3014
*
4A1B|1|1|G|3019
4A1B|1|1|G|3020
4A1B|1|1|A|3021
4A1B|1|1|A|3022
4A1B|1|1|C|3023
4A1B|1|1|A|3024
4A1B|1|1|C|3025

Current chains

Chain 1

26S RRNA

Nearby chains

Chain J

TRANSLATION INITIATION FACTOR EIF-6, PUTATIVE FAMILY PROTEIN

Chain K

UBIQUITIN-60S RIBOSOMAL PROTEIN L40