3D structure

PDB id
4A1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
GAGCG*UUAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_37976.1
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
44

Unit IDs

4A1B|1|1|G|3189
4A1B|1|1|A|3190
4A1B|1|1|G|3191
4A1B|1|1|C|3192
4A1B|1|1|G|3193
*
4A1B|1|1|U|3217
4A1B|1|1|U|3218
4A1B|1|1|A|3219
4A1B|1|1|A|3220
4A1B|1|1|C|3221

Current chains

Chain 1
26S RRNA

Nearby chains

Chain E
RPL6
Chain F
RPL14

Coloring options:

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