IL_4A2I_012

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4A2I|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4A2I_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1225

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4A2I|1|A|G|147
4A2I|1|A|G|148
4A2I|1|A|A|149
4A2I|1|A|U|150
4A2I|1|A|A|151
4A2I|1|A|A|152
4A2I|1|A|C|153
*
4A2I|1|A|G|168
4A2I|1|A|C|169
4A2I|1|A|U|170
4A2I|1|A|A|171
4A2I|1|A|A|172
4A2I|1|A|U|173
4A2I|1|A|A|174
4A2I|1|A|C|175

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20