IL_4A2I_018

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4A2I_018 not in the Motif Atlas

Homologous match to IL_4LFB_015

Geometric discrepancy: 0.146

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4A2I|1|A|A|371
4A2I|1|A|C|372
4A2I|1|A|A|373
4A2I|1|A|A|374
4A2I|1|A|U|375
*
4A2I|1|A|A|389
4A2I|1|A|U|390

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16