3D structure

PDB id
4A2I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor
Experimental method
ELECTRON MICROSCOPY
Resolution
16.5 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4A2I_041 not in the Motif Atlas
Homologous match to IL_5J7L_038
Geometric discrepancy: 0.0737
The information below is about IL_5J7L_038
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

4A2I|1|A|G|887
4A2I|1|A|G|888
4A2I|1|A|A|889
4A2I|1|A|G|890
4A2I|1|A|U|891
4A2I|1|A|A|892
4A2I|1|A|C|893
4A2I|1|A|G|894
*
4A2I|1|A|U|905
4A2I|1|A|A|906
4A2I|1|A|A|907
4A2I|1|A|A|908
4A2I|1|A|A|909
4A2I|1|A|C|910

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain L
30S RIBOSOMAL PROTEIN S12
Chain V
PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA

Coloring options:


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