IL_4A2I_061

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4A2I_061 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1494

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4A2I|1|A|G|1401
4A2I|1|A|C|1402
4A2I|1|A|C|1403
4A2I|1|A|C|1404
*
4A2I|1|A|G|1497
4A2I|1|A|U|1498
4A2I|1|A|A|1499
4A2I|1|A|A|1500
4A2I|1|A|C|1501

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains