IL_4ADV_012

3D structure

PDB id

4ADV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4ADV|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ADV_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1225

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4ADV|1|A|G|147
4ADV|1|A|G|148
4ADV|1|A|A|149
4ADV|1|A|U|150
4ADV|1|A|A|151
4ADV|1|A|A|152
4ADV|1|A|C|153
*
4ADV|1|A|G|168
4ADV|1|A|C|169
4ADV|1|A|U|170
4ADV|1|A|A|171
4ADV|1|A|A|172
4ADV|1|A|U|173
4ADV|1|A|A|174
4ADV|1|A|C|175

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20