3D structure

PDB id
4ADV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
GGAC*GC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4ADV_013 not in the Motif Atlas
Geometric match to IL_3MXH_005
Geometric discrepancy: 0.285
The information below is about IL_3MXH_005
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_15052.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
8

Unit IDs

4ADV|1|A|G|203
4ADV|1|A|G|204
4ADV|1|A|A|205
4ADV|1|A|C|206
*
4ADV|1|A|G|213
4ADV|1|A|C|214

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


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