3D structure

PDB id
4ADV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
UAGU*AG
Length
6 nucleotides
Bulged bases
4ADV|1|A|G|251
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4ADV_015 not in the Motif Atlas
Homologous match to IL_5J7L_015
Geometric discrepancy: 0.3393
The information below is about IL_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47074.2
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
4

Unit IDs

4ADV|1|A|U|249
4ADV|1|A|A|250
4ADV|1|A|G|251
4ADV|1|A|U|252
*
4ADV|1|A|A|274
4ADV|1|A|G|275

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain Q
30S RIBOSOMAL PROTEIN S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0443 s